organoid_tracker.visualizer.link_score_visualizer module

class organoid_tracker.visualizer.link_score_visualizer.LinkScoreVisualizer(window: Window, parent_viewer: Type[Visualizer] = <class 'organoid_tracker.visualizer.standard_image_visualizer.StandardImageVisualizer'>)

Bases: ExitableImageVisualizer

Shows the link score for each link at the current time point. In the View menu, you can toggle between showing the raw link score (lower = more likely) and the likelihood percentage.

In case you haven’t predicted the link scores yet, a “?” is shown for all links. (To predict link scores, run the cell tracker from the Tools menu in the main screen.)

get_extra_menu_options() → Dict[str, Any]