OrganoidTracker

Tutorials

  • Manual tracking and error correction
  • Automatic tracking
  • Plugin tutorial
  • Training the neural network
  • Jupyter notebook
  • Working with custom metadata
  • Segmentation masks editor

For reference

  • API reference
  • Batch operations
  • Custom tracking formats
  • The data axes editor
  • Supported image formats
  • Installation instructions
  • The scripts
  • Supported tracking formats

Browse the code

  • organoid_tracker package
    • Subpackages
      • organoid_tracker.comparison package
      • organoid_tracker.config package
      • organoid_tracker.connecting package
      • organoid_tracker.connection_analysis package
      • organoid_tracker.coordinate_system package
      • organoid_tracker.core package
      • organoid_tracker.division_detection_cnn package
      • organoid_tracker.gui package
      • organoid_tracker.guizela_tracker_compatibility package
      • organoid_tracker.image_loading package
      • organoid_tracker.imaging package
      • organoid_tracker.link_detection_cnn package
      • organoid_tracker.linking package
      • organoid_tracker.linking_analysis package
      • organoid_tracker.local_marginalization package
      • organoid_tracker.plugin package
      • organoid_tracker.position_analysis package
      • organoid_tracker.position_detection package
      • organoid_tracker.position_detection_cnn package
      • organoid_tracker.text_popup package
      • organoid_tracker.util package
      • organoid_tracker.visualizer package
        • Submodules
        • Module contents
    • Module contents
OrganoidTracker
  • »
  • organoid_tracker package »
  • organoid_tracker.visualizer package »
  • organoid_tracker.visualizer.link_and_position_editor module
  • View page source

organoid_tracker.visualizer.link_and_position_editor module

class organoid_tracker.visualizer.link_and_position_editor.LinkAndPositionEditor(window: Window, *, selected_positions: Iterable[Position] = ())

Bases: AbstractEditor

Editor for cell links and positions. Use the Insert or Enter key to insert new cells. • To select a cell, click on it. You can then shift its position using the Shift key, or delete it using the Delete or Backspace key. • If you have selected two cells, the Insert/Enter and Delete/Backspace keys will insert or delete a link between them. • If you have selected one cell and press Insert/Enter in the next or previous time point, a new cell will be inserted

that is linked to the existing one.

  • These are just the basics, see the user manual for more information on how to use this editor.

get_extra_menu_options()
Previous Next

© Copyright 2020-2025, Jeroen van Zon Lab.

Built with Sphinx using a theme provided by Read the Docs.