organoid_tracker.guizela_tracker_compatibility package

Submodules

• organoid_tracker.guizela_tracker_compatibility.axis_lib module
• organoid_tracker.guizela_tracker_compatibility.axis_lib_v2 module
• organoid_tracker.guizela_tracker_compatibility.cell_type_converter module
• organoid_tracker.guizela_tracker_compatibility.guizela_data_exporter module
• organoid_tracker.guizela_tracker_compatibility.guizela_data_importer module
• organoid_tracker.guizela_tracker_compatibility.track_lib module
• organoid_tracker.guizela_tracker_compatibility.track_lib_v2 module
• organoid_tracker.guizela_tracker_compatibility.track_lib_v3 module
• organoid_tracker.guizela_tracker_compatibility.track_lib_v4 module

Module contents

The code used to laod and save files in Guizela’s old tracking format. Necessary so that we can still use the tracking data that predates OrganoidTracker.

To load some data:

>>> from organoid_tracker.core.experiment import Experiment
>>> experiment = Experiment()
>>> from organoid_tracker.guizela_tracker_compatibility import guizela_data_importer
>>> guizela_data_importer.add_data_to_experiment(experiment, "path/to/directory")

And to save the data:

>>> from organoid_tracker.core.experiment import Experiment
>>> experiment = Experiment()  # Placeholder, replace with actual data
>>> from organoid_tracker.guizela_tracker_compatibility import guizela_data_exporter
>>> guizela_data_exporter.export_links(experiment, "path/to/directory")