organoid_tracker package

Subpackages

• organoid_tracker.comparison package
• organoid_tracker.config package
• organoid_tracker.connecting package
• organoid_tracker.connection_analysis package
• organoid_tracker.coordinate_system package
• organoid_tracker.core package
• organoid_tracker.division_detection_cnn package
• organoid_tracker.gui package
• organoid_tracker.guizela_tracker_compatibility package
• organoid_tracker.image_loading package
• organoid_tracker.imaging package
• organoid_tracker.link_detection_cnn package
• organoid_tracker.linking package
• organoid_tracker.linking_analysis package
• organoid_tracker.local_marginalization package
• organoid_tracker.plugin package
• organoid_tracker.position_analysis package
• organoid_tracker.position_detection package
• organoid_tracker.position_detection_cnn package
• organoid_tracker.text_popup package
• organoid_tracker.util package
• organoid_tracker.visualizer package

Module contents

This is the package of OrganoidTracker, where all the code is stored.

To load an experiment, use:

>>>    from organoid_tracker.imaging import io
>>>    experiment = io.load_data_file("some_file_name.aut")

Head over to the organoid_tracker.core.experiment.Experiment class to see how the experimental data is structured.