organoid_tracker.gui.gui_experiment module
- class organoid_tracker.gui.gui_experiment.GuiExperiment(experiment: Experiment)
Bases:
objectUsed to store the experiment, along with some data that is only relevant within a GUI app, but that doesn’t need to be saved.
- KNOWN_EVENTS = {'any_updated_event', 'command_event', 'data_updated_event', 'program_close_event', 'tab_list_updated_event'}
- add_experiment(experiment: Experiment) int
Adds an experiment to the tab list. Returns the index that is used for the new tab, which you can then use to select that tab.
- execute_command(command: str)
Calls all registered command handlers with the given argument. Used when a user entered a command.
- get_active_experiments() Iterable[Experiment]
Gets all currently active experiments. This will usually be one experiment, but the user has the option to open all experiments.
- get_active_tabs() List[SingleGuiTab]
Gets the currently active tabs. Either this is a single tab, or if the “All tabs” option has been selected, this returns all tabs.
- get_all_tabs() List[SingleGuiTab]
Gets all currently open tabs.
- get_experiment() Experiment
Gets the currently selected experiment. Raises UserError if no particular experiment has been selected.
- get_marker_by_save_name(save_name)
- get_open_tab() SingleGuiTab
Gets the currently selected tab. Raises UserError if no particular tab has been selected.
- get_registered_markers(type)
- get_selectable_experiments() Iterable[Tuple[int, str]]
Gets all selectable experiment names, along with an index for self.select_experiment()
- goto_position(position: Position)
Moves the view towards the given position. The position must have a time point set.
- is_selected(select_index: int) bool
Checks if the select_index is of the currently selected experiment.
- program_closing()
Called when the program is closed (so after saving the data - the user cannot cancel anymore at this point).
- redraw_data()
Redraws the main figure using the latest values from the experiment.
- redraw_image_and_data()
Redraws the image using the latest values from the experiment.
- register_event_handler(event: str, source: str, action: Callable)
Registers an event handler. Supported events:
All matplotlib events.
“data_updated_event” for when the figure annotations need to be redrawn.
“any_updated_event” for when the complete figure needs to be redrawn, including the menu bar and image.
“tab_list_updated_event” for when just the list of available experiments needs to be redrawn.
“command_event” for when a command is executed
- remove_experiment(experiment: Experiment)
Removes the given experiment from the list of loaded experiments. If no experiments are remaining, an empty one will be initialized.
- replace_selected_experiment(experiment: Experiment)
Discards the currently selected experiment, and replaces it with a new one
- class organoid_tracker.gui.gui_experiment.SingleGuiTab(experiment: Experiment)
Bases:
object- property experiment: Experiment