organoid_tracker.comparison.links_comparison module

Compares two sets of links on the level of individual links. Missed cell divisions/deaths are not reported. Instead, for every link in the baseline data, it is checked if it is present in the automatic data, and vice versa.

class organoid_tracker.comparison.links_comparison.LinksReport(**kwargs: Union[float, int, str, bool, List[float], List[int], List[str], List[bool]])

Bases: ComparisonReport

calculate_time_correctness_statistics() → Statistics

calculate_z_correctness_statistics() → Statistics

organoid_tracker.comparison.links_comparison.compare_links(ground_truth: Experiment, scratch: Experiment, max_distance_um: float = 5, margin_xy_px: int = 0) → LinksReport