OrganoidTracker
Tutorials
Manual tracking and error correction
Automatic tracking
Plugin tutorial
Training the neural network
Jupyter notebook
Working with custom metadata
Segmentation masks editor
For reference
API cookbook
Batch operations
Custom tracking formats
The data axes editor
Supported image formats
Installation instructions
The scripts
Supported tracking formats
Browse the code
organoid_tracker package
Subpackages
organoid_tracker.comparison package
organoid_tracker.config package
organoid_tracker.connecting package
organoid_tracker.connection_analysis package
organoid_tracker.coordinate_system package
organoid_tracker.core package
organoid_tracker.gui package
organoid_tracker.guizela_tracker_compatibility package
organoid_tracker.image_loading package
organoid_tracker.imaging package
organoid_tracker.linking package
organoid_tracker.linking_analysis package
organoid_tracker.local_marginalization package
organoid_tracker.neural_network package
Subpackages
Submodules
Module contents
organoid_tracker.plugin package
organoid_tracker.position_analysis package
organoid_tracker.position_detection package
organoid_tracker.text_popup package
organoid_tracker.util package
organoid_tracker.visualizer package
Module contents
OrganoidTracker
»
organoid_tracker package
»
organoid_tracker.neural_network package
»
organoid_tracker.neural_network.position_detection_cnn package
»
organoid_tracker.neural_network.position_detection_cnn.loss_functions module
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organoid_tracker.neural_network.position_detection_cnn.loss_functions module