OrganoidTracker

Tutorials

  • Manual tracking and error correction
  • Automatic tracking
  • Plugin tutorial
  • Training the neural network
  • Jupyter notebook
  • Working with custom metadata
  • Segmentation masks editor

For reference

  • API cookbook
  • Batch operations
  • Custom tracking formats
  • The data axes editor
  • Supported image formats
  • Installation instructions
  • The scripts
  • Supported tracking formats

Browse the code

  • organoid_tracker package
    • Subpackages
      • organoid_tracker.comparison package
      • organoid_tracker.config package
      • organoid_tracker.connecting package
      • organoid_tracker.connection_analysis package
      • organoid_tracker.coordinate_system package
      • organoid_tracker.core package
      • organoid_tracker.gui package
      • organoid_tracker.guizela_tracker_compatibility package
      • organoid_tracker.image_loading package
      • organoid_tracker.imaging package
      • organoid_tracker.linking package
      • organoid_tracker.linking_analysis package
      • organoid_tracker.local_marginalization package
      • organoid_tracker.neural_network package
        • Subpackages
        • Submodules
        • Module contents
      • organoid_tracker.plugin package
      • organoid_tracker.position_analysis package
      • organoid_tracker.position_detection package
      • organoid_tracker.text_popup package
      • organoid_tracker.util package
      • organoid_tracker.visualizer package
    • Module contents
OrganoidTracker
  • organoid_tracker package
  • organoid_tracker.neural_network package
  • organoid_tracker.neural_network.link_detection_cnn package
  • organoid_tracker.neural_network.link_detection_cnn.ImageWithLinks_to_tensor_loader module
  • View page source

organoid_tracker.neural_network.link_detection_cnn.ImageWithLinks_to_tensor_loader module

“ Loads images and positions into tensors and can write these tensors into TFR files

organoid_tracker.neural_network.link_detection_cnn.ImageWithLinks_to_tensor_loader.load_images_with_links(image_with_links: _ImageWithLinks, time_window=[0, 0])
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