organoid_tracker.linking_analysis.lineage_fate_finder module

Used to get a summary of what happens to a single cell lineage. How many divisions, deaths, ends and errors are there?

class organoid_tracker.linking_analysis.lineage_fate_finder.LineageFate

Bases: object

Calculates the number of occurences of certain events in the lineage.

deaths: int = 0

divisions: int = 0

ends: int = 0

sheds: int = 0

tracks: int = 0

organoid_tracker.linking_analysis.lineage_fate_finder.get_lineage_fate(position: Position, links: Links, position_data: PositionData, last_time_point_number: int) → LineageFate

Calculates the fate of the lineage. The last time point number is used to ignore lineage ends that occur in that time point.