organoid_tracker.linking_analysis.errors module

Definition of all available errors. See linking_markers for how to apply these errors.

class organoid_tracker.linking_analysis.errors.Error(value, names=<not given>, *values, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: Enum

CELL_MERGE = 6

FAILED_SHAPE = 12

LOW_LINK_SCORE = 14

LOW_MOTHER_SCORE = 9

MOVED_TOO_FAST = 11

NO_FUTURE_POSITION = 1

NO_PAST_POSITION = 5

POTENTIALLY_NOT_A_MOTHER = 2

POTENTIALLY_SHOULD_BE_A_MOTHER = 3

POTENTIALLY_WRONG_DAUGHTERS = 7

SHRUNK_A_LOT = 10

TOO_MANY_DAUGHTER_CELLS = 4

UNCERTAIN_POSITION = 13

YOUNG_MOTHER = 8

get_message() → str

Gets an user-friendly error message.

get_severity() → Severity

Gets the severity.

class organoid_tracker.linking_analysis.errors.Severity(value, names=<not given>, *values, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: Enum

ERROR = 1

WARNING = 0