organoid_tracker.linking_analysis.cell_compartment_finder module

class organoid_tracker.linking_analysis.cell_compartment_finder.CellCompartment(value, names=<not given>, *values, module=None, qualname=None, type=None, start=1, boundary=None)

Bases: Enum

DIVIDING = 0

NON_DIVIDING = 1

UNKNOWN = 2

organoid_tracker.linking_analysis.cell_compartment_finder.find_compartment(experiment: Experiment, position: Position) → CellCompartment

Finds the compartment of the cell. If a cell is non-dividing, but a cell close by is dividing, then the cell is considered to be in a dividing compartment.

organoid_tracker.linking_analysis.cell_compartment_finder.find_compartment_ext(positions: PositionCollection, links: Links, resolution: ImageResolution, division_lookahead_time_points: int, position: Position) → CellCompartment

Finds the compartment of the cell. If a cell is non-dividing, but a cell close by is dividing, then the cell is considered to be in a dividing compartment.