organoid_tracker.image_loading.general_image_loader module

Tries to find out which image loader to use based on two settings, container and patter n.

organoid_tracker.image_loading.general_image_loader.load_images(experiment: Experiment, container: str, pattern: str, min_time_point: int = 0, max_time_point: int = 1000000000)

Loads images from any of the supported formats. The container is a file or a directory, pattern is the format used to search within that file or directory. For a sequence of TIFF files, container will be a directroy and pattern the pattern of files in that directory. For a LIF file, container will be the LIF file, and pattern the name of the experiment within that file. Etc.

organoid_tracker.image_loading.general_image_loader.load_images_from_dictionary(experiment: Experiment, dictionary: Dict[str, Any], min_time_point: int = 0, max_time_point: int = 1000000000)

For loading images that have been stored using image_loader.serialize_to_dictionary()