organoid_tracker.image_loading.czifile_image_loader module

Image loader for CZI files.

organoid_tracker.image_loading.czifile_image_loader.load_from_czi_file(experiment: Experiment, file: str, series_index_one: Union[str, int], min_time_point: int = 0, max_time_point: int = 1000000000)

Sets up the experimental images for a LIF file that is not yet opened.

organoid_tracker.image_loading.czifile_image_loader.load_from_czi_reader(experiment: Experiment, file: str, reader: CziFile, serie_index_one: int, min_time_point: int = 0, max_time_point: int = 1000000000)

Sets up the experimental images for an already opened LIF file.

organoid_tracker.image_loading.czifile_image_loader.read_czi_file(file_path: str) → Tuple[CziFile, int]

Reads a CZI file and returns the reader and the number of series.