organoid_tracker.division_detection_cnn.training_data_creator module

organoid_tracker.division_detection_cnn.training_data_creator.create_image_with_divisions_list(experiments: Iterable[Experiment], division_multiplier=10, loose_end_multiplier=1, counter_examples_per_div=0.25, window=(3, 2), loose_end_window=1, full_window=False, exclusion_window=None)

“Creates training data set. Allows upsampling of dividing and dying cells (loose ends). If full_window is TRUE all cells within the window around cell division are deemed dividing, otherwise only the anaphase is classified as division. The exclusion window allows the exclusion of difficult cases just outside the window if full_window=TRUE.

organoid_tracker.division_detection_cnn.training_data_creator.create_image_with_positions_list(experiment: Experiment)

organoid_tracker.division_detection_cnn.training_data_creator.inside_image(position: ~organoid_tracker.core.position.Position, offset: <property object at 0x7f937d488310>, image_shape: ~typing.Tuple[int])