organoid_tracker.connection_analysis.cluster_finder module

Used to find groups of positions that are connected to each other using connections.

class organoid_tracker.connection_analysis.cluster_finder.Cluster(*positions: Position)

Bases: object

Represents a cluster of positions.

positions: Set[Position]

organoid_tracker.connection_analysis.cluster_finder.find_clusters(positions: PositionCollection, connections: Connections, time_point: TimePoint) → List[Cluster]

Returns all clusters - positions that are connected via one or more connections. If position X and position Y are in the same cluster, it means that if you follow one or multiple connections, you can get from X to Y.