organoid_tracker.connecting.connector_using_angles module

Uses a fancy algorithm to check whether a cell is in between two cells. If not, the cells are considered neighbors. Original implementation by Max Betjes.

The idea is, that for every pair of cells that could be neighbors, we find the cell that is closes to the two. Then, we check whether that cell is in between the two given cells. If no, then the two given cells are considered neighbors.

organoid_tracker.connecting.connector_using_angles.create_connections(experiment: Experiment, *, print_progress: bool = False) → Connections

Creates the connections for the given experiment, using the relative distances.